Exam 16: The Citric Acid Cycle
Two of the steps in the oxidative decarboxylation of pyruvate to acetyl-CoA do not involve the three carbons of pyruvate,yet are essential to the operation of the pyruvate dehydrogenase complex.Explain.
The two steps catalyzed by dihydrolipoyl dehydrogenase (E3)are required to regenerate the oxidized form of lipoate,bound to dihydrolipoyl transacetylase,from the dihydrolipoyl (reduced)form produced in the oxidation of pyruvate.First,FAD is reduced to FADH2 to reoxidize the dihydrolipoate,then NAD+ is reduced to NADH to reoxidize the FADH2 to complete the reaction.
Suppose you found an overly high level of pyruvate in a patient's blood and urine.One possible cause is a genetic defect in the enzyme pyruvate dehydrogenase,but another plausible cause is a specific vitamin deficiency.Explain what vitamin might be deficient in the diet,and why that would account for high levels of pyruvate to be excreted in the urine.How would you determine which explanation is correct?
The most likely explanation is that the patient has a deficiency of thiamine,without which the cell cannot make thiamine pyrophosphate,the cofactor for pyruvate dehydrogenase.The inability to oxidize pyruvate produced by glycolysis to acetyl-CoA would lead to accumulation of pyruvate in blood and urine.The most direct test for this deficiency is to feed a diet supplemented with thiamine and determine whether urinary pyruvate levels fall.
What is the function of FAD in the pyruvate dehydrogenase complex? How is it regenerated?
FAD serves as the electron acceptor in the re-oxidation of the cofactor dihydrolipoate.It is converted to FADH2 by this reaction and is regenerated by the passage of electrons to NAD+.
For the following reaction, G'° = 29.7 kJ/mol. L-Malate + NAD+ oxaloacetate + NADH + H+
The reaction as written:
All of the oxidative steps of the citric acid cycle are linked to the reduction of NAD+ except the reaction catalyzed by:
The citric acid cycle is frequently described as the major pathway of aerobic catabolism,which means that it is an oxygen-dependent degradative process.However,none of the reactions of the cycle directly involves oxygen as a reactant.Why is the pathway oxygen-dependent?
Which of the below is not required for the oxidative decarboxylation of pyruvate to form acetyl-CoA?
In mammals,each of the following occurs during the citric acid cycle except:
Match the cofactor with its function in the citric acid cycle.A given function may be used more than once or not at all.
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In which reaction of the citric acid cycle does substrate-level phosphorylation occur?
Briefly describe the relationship of the pyruvate dehydrogenase complex reaction to glycolysis and the citric acid cycle.
A function of the glyoxylate cycle,in conjunction with the citric acid cycle,is to accomplish the:
The reaction of the citric acid cycle that is most similar to the pyruvate dehydrogenase complex-catalyzed conversion of pyruvate to acetyl-CoA is the conversion of:
The oxidative decarboxylation of -ketoglutarate proceeds by means of multistep reactions in which all but one of the following cofactors are required.Which one is not required?
At what point in the citric acid cycle do the methyl carbon from acetyl-CoA and the carbonyl carbon from oxaloacetate become chemically equivalent?
Entry of acetyl-CoA into the citric acid cycle is decreased when:
Malonate is a competitive inhibitor of succinate dehydrogenase.If malonate is added to a mitochondrial preparation that is oxidizing pyruvate as a substrate,which of the following compounds would you expect to decrease in concentration?
Which of the following is not an intermediate of the citric acid cycle?
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