Exam 17: Recombinant DNA Technology

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In a typical PCR,primers are used to cleave specific regions of the DNA template.

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Molecular biologists rely on many,often sophisticated,techniques to pursue their discipline.Ultracentrifugation,electron microscopy,X-ray diffraction,electrophoresis,and computer interfacing are fundamental tools.Model organisms provide the raw materials for study.List three organisms (or organismic groups)often used by recombinant DNA technologists and describe a major advantage of each group.

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Bacteriophage: useful vector,relatively simple genome,short generation time.Bacteria: relatively simple,short generation time,simple growth requirements,well understood genetics,transformable.Viruses: capable of carrying recombinant DNA and infecting eukaryotic cells.Yeast: relatively simple for a eukaryote,short generation time,simple growth requirements,transformable.

If a researcher wishes to clone a gene using typical restriction endonucleases,how does the restriction endonuclease recognize genes in the genome?

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Restriction endonucleases do not recognize functional regions in the genome (genes).They can recognize only relatively short DNA sequences,which have no relationship to functionality.

Assume that you have cut λ DNA with the restriction enzyme HindIII.You separate the fragments on an agarose gel and stain the DNA with ethidium bromide.You notice that the intensity of the stain is less in the bands that have migrated closer to the "+" pole.Give an explanation for this finding.

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In a PCR,primers are complementary to stretches of DNA with which they anneal.

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Nucleic acid blotting is widely used in recombinant DNA technology.In a Southern blot,one generally ________.

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A restriction map provides the location of sites cleaved by restriction enzymes.

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In what way are specific DNA sequences of the template amplified in the polymerase chain reaction? In other words,how does one target the target?

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Some restriction enzymes cleave DNA in such a manner as to produce blunt ends.Ligation of blunt end fragments is most often enhanced by the use of the enzyme terminal deoxynucleotidyl transferase.Speculate on the function of deoxynucleotidyl transferase in terms of using blunt end fragments in cloning.

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Words such as did,mom,and pop have something in common with the fundamental tool of recombinant DNA technology.In the context of recombinant DNA technology,which term would be used to describe such words?

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When propagating a clone in the lambda phage,would you have more immediate success if the phage entered the lysogenic cycle or the lytic cycle?

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Assume that a researcher conducted a cloning experiment using a typical plasmid,transformed an appropriate host bacterial strain,and plated the bacteria on an appropriate X-gal medium.Blue and white colonies appeared.Which of the two types of colonies,blue or white,would more likely contain the recombinant plasmid? Why?

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What is the specific application of reverse transcriptase in the preparation of cDNA?

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Under ideal conditions,how many copies of all the sequences of the host genome should be represented in a genomic library?

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The main purpose of a probe is its insertion in plasmid DNA.

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E.coli is a common YAC.

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What might be a reasonable function of restriction endonucleases in a bacterium,distinct from their use by molecular biologists?

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In the polymerase chain reaction,what is the purpose of the initial high temperature? What is the purpose of cooling in the second step?

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A common term for a plasmid or other DNA element that serves as a cloning vehicle is vector.

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During a PCR,heat is provided to inactivate the polymerase enzyme.

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