Exam 21: Genetics of Complex Traits

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How are the gene interaction maps that are made by analysis of synthetic genetic arrays related to protein interaction maps made by e.g.yeast two-hybrid analysis?

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Genetic interaction maps from synthetic genetic arrays define associations as pairs of genes that show synthetic interactions;thus any two genes whose loss of function mutants are lethal or sick in combination but not individually,are connected by a line on the diagram.In protein interaction maps,nodes representing proteins are connected if they are found to physically interact either in yeast two-hybrid screens or in affinity capture experiments.Thus,the protein interaction maps indicate physical interactions between proteins,which like means that the proteins are part of the same pathway or complex.This contrasts with the genetic interaction maps,in which interacting proteins are often considered to be in parallel pathways and do not necessarily interact physically.

Explain why budding yeast (Saccharomyces cerevisiae)is a particularly useful tool for functional genomics.What are the limitations of budding yeast as model organism?

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Budding yeast can easily be switched between either a diploid or haploid growth phase.Therefore mutations that would be lethal as haploids can be rescued (complemented)as diploids,and conversely,mutant genotypes can be assembled in the diploid phase and tested for lethality or other phenotypes in the haploid phase.Furthermore,the highly efficient homologous recombination system in yeast is an effective means of targeted gene replacement or gene deletion,even at a genomic scale.Indeed,collections of yeast strains each bearing a mutation in a gene of interest are commercially available.Yeast also has other advantages such as fast growth and compact size,which make it well-suited to automated high density screening.The major drawback of yeast is that it is unicellular.Thus,many genes and pathways specific to multicellularity cannot be studied in yeast.

Which of the following is not true of the most highly connected nodes in a genetic interaction map?

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E

Which of these would be of the least use in a gene deletion cassette for use in yeast?

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In a genetic interaction map,a line connects two genes that are both required for normal growth.

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There are more mutant combinations that cause lethality than there are single mutants that cause lethality.

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Which of the following is a property of Saccharomyces cerevisiae but not Caenorhabditis elegans?

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Modifiers in genetic networks control the strength of mutant phenotypes.

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Which of the following is the correct order of steps in a synthetic genetic array screen?

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Approximately what proportion of genes have been shown to be essential for viability in yeast?

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What is the difference between siRNA and shRNA?

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What do synthetic genetic arrays reveal about the function of genes in general?

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A comprehensive collection of deletion mutants is required for synthetic genetic array analysis.

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shRNA is a type of RNAi.

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How would the methods for genome-wide deletion screens change if barcodes were not available?

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The analysis of genetic architecture in model organisms indicates that complex phenotypes are controlled by relatively few genes.

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Genes of round worms (Caenorhabitis elegans)can be silenced by soaking the worms in siRNA.

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Synthetic genetic arrays involve mating a ________ with __________.

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Genes that are synthetic lethal most likely function in

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In genetic interaction maps,most genes have the same number of links to other genes.

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