Exam 9: Digital Analysis of Dna

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The recognition site for a restriction enzyme is 5′ ACC^GGT 3′.The ^ symbol indicates the site of cleavage.After digestion of DNA with this restriction enzyme, how will the ends of the resulting DNA fragments look?

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What is the origin and physiological function of restriction endonucleases?

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Baby frog #1 is homozygous for a mutant allele of gene B (allele b1).Compare the DNA sequence from baby frog #1 with the wild-type sequence to determine how allele b1 is different from the wild-type.What effect does the mutation in allele b1 have on the protein? Baby frog #1 is homozygous for a mutant allele of gene B (allele b<sup>1</sup>).Compare the DNA sequence from baby frog #1 with the wild-type sequence to determine how allele b<sup>1</sup> is different from the wild-type.What effect does the mutation in allele b<sup>1</sup> have on the protein?

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Which is a characteristic of a plasmid used as a cloning vector? (Select all that apply. )

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In gel electrophoresis, DNA fragments move at different rates because they have different

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The recognition site for a restriction enzyme is 5′ ACCGG^T 3′.The ^ symbol indicates the site of cleavage.After digestion of DNA with this restriction enzyme, how will the ends of the resulting DNA fragments look?

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What is the function of the ampr gene in a plasmid vector?

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In Sanger sequencing, the role of the DNA polymerase is to

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Why was another nucleotide not added to the smallest fragment?

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The mouse genome consists of 2,700 Mb. A genomic library is constructed using BAC vectors and overlapping fragments of the mouse genome. The average size of the mouse DNA inserts is 200 kb. -A mouse genomic library is constructed so that the number of clones equals one genomic equivalent.Is it likely that this library contains the entire mouse genome?

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You performed a Sanger sequencing reaction and obtained the following read.In this figure, A = green, C = purple, G = black, T = red.The height of the peaks is unimportant.The smallest molecule is at the left of the trace. You performed a Sanger sequencing reaction and obtained the following read.In this figure, A = green, C = purple, G = black, T = red.The height of the peaks is unimportant.The smallest molecule is at the left of the trace.   -What is the sequence of the template DNA used for this sequencing reaction? -What is the sequence of the template DNA used for this sequencing reaction?

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You performed a Sanger sequencing reaction and obtained the following read.In this figure, A = green, C = purple, G = black, T = red.The height of the peaks is unimportant.The smallest molecule is at the left of the trace. You performed a Sanger sequencing reaction and obtained the following read.In this figure, A = green, C = purple, G = black, T = red.The height of the peaks is unimportant.The smallest molecule is at the left of the trace.   -Which is a step in hierarchical genome sequencing that is not found in shotgun genome sequencing? -Which is a step in hierarchical genome sequencing that is not found in shotgun genome sequencing?

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The mouse genome consists of 2,700 Mb. A genomic library is constructed using BAC vectors and overlapping fragments of the mouse genome. The average size of the mouse DNA inserts is 200 kb. -What is the minimum number of clones that should be in this mouse genomic library to have a 95% chance that it contains the entire genome?

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In frogs, green skin is determined by gene B.The wild-type sequence of the 5′ end of the RNA-like strand of the entire first exon is shown below.The gene encodes an enzyme that functions to convert a brown compound into a green pigment in the skin. 5′ ACTCAAGCACAGGTCGCATAAATGTTCCTGTTATTTGG… 3′ The table of codons is provided here: In frogs, green skin is determined by gene B.The wild-type sequence of the 5′ end of the RNA-like strand of the entire first exon is shown below.The gene encodes an enzyme that functions to convert a brown compound into a green pigment in the skin. 5′ ACTCAAGCACAGGTCGCATAAATGTTCCTGTTATTTGG… 3′ The table of codons is provided here:   -Which are the first three amino acids encoded by the wild-type sequence of gene B? -Which are the first three amino acids encoded by the wild-type sequence of gene B?

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A third mutant allele of gene B (allele b3)causes the frogs' eyes to become green, instead of their normal red color.Normally, gene B effects only skin color.What term describes this allele?

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In Sanger sequencing, what causes DNA synthesis to terminate at a specific base?

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The sequence of gene B from another baby frog who is homozygous for allele b2 is shown.What effect does the mutation in allele b2 have on the protein? 5′ AGGTCGCATAAATGTTCCTGTAATTTGG… 3′

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The mouse genome consists of 2,700 Mb. A genomic library is constructed using BAC vectors and overlapping fragments of the mouse genome. The average size of the mouse DNA inserts is 200 kb. -How many clones would make up one genomic equivalent?

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Which method of fragmenting DNA would not be useful for sequencing a genome for the first time?

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Which is an example of a recombinant DNA molecule?

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